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itkMegaCaptureImport.h
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1 /*=========================================================================
2  Authors: The GoFigure Dev. Team.
3  at Megason Lab, Systems biology, Harvard Medical school, 2009-11
4 
5  Copyright (c) 2009-11, President and Fellows of Harvard College.
6  All rights reserved.
7 
8  Redistribution and use in source and binary forms, with or without
9  modification, are permitted provided that the following conditions are met:
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11  Redistributions of source code must retain the above copyright notice,
12  this list of conditions and the following disclaimer.
13  Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
15  and/or other materials provided with the distribution.
16  Neither the name of the President and Fellows of Harvard College
17  nor the names of its contributors may be used to endorse or promote
18  products derived from this software without specific prior written
19  permission.
20 
21  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
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32 
33 =========================================================================*/
34 
35 #ifndef __itkMegaCaptureImport_h
36 #define __itkMegaCaptureImport_h
37 
38 #include <vector>
39 #include <algorithm>
40 #include <string.h>
41 
42 #include "itkLightProcessObject.h"
43 
44 #include <itksys/SystemTools.hxx>
45 #include "itkRegularExpressionSeriesFileNames.h"
46 
48 #include "QGoIOConfigure.h"
49 
50 // #include <QProgressBar>
51 
52 namespace itk
53 {
60 class QGOIO_EXPORT MegaCaptureImport:public LightProcessObject
61 {
62 public:
63  //typedef std::list<int> IntListType;
64  typedef std::vector< int > IntVectorType;
65  typedef std::pair< IntVectorType, IntVectorType > PairIntVectorType;
66  typedef std::vector< std::string > StringVectorType;
67 
70 
71  typedef LightProcessObject Superclass;
72 
73  typedef SmartPointer< Self > Pointer;
74  typedef SmartPointer< const Self > ConstPointer;
75 
77  itkTypeMacro(MegaCaptureImport, LightProcessObject);
78 
80  itkNewMacro(Self);
81 
82  void SetFileName(const std::string & iName);
83 
84  void SetTimeBased(const bool & iBool);
85 
86  void Glob();
87 
88  void CreateOutput();
89 
91 
92  void Update();
93 
94  std::string GetHeaderFilename();
95 
98  static bool IsNewMegaCapture(const std::string & iFilename);
99 
101  static std::string CleanFileName(const std::string & iFilename);
102 
105  static PairIntVectorType GetStartAndLengthOfNumericalGroupFilename(
106  const std::string & iFilename);
107 
108  static bool AreTheseNumericalGroupNewMegaCapture(
109  PairIntVectorType StartAndLengthNumericalGroup);
110 
111 protected:
114 
116  void OldMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
117  const std::vector< unsigned int > & iNumericalValues);
118 
120  void NewMegaCaptureFile(GoFigureFileInfoHelper & ioTempInfo,
121  const std::vector< unsigned int > & iNumericalValues);
122 
123 private:
124  MegaCaptureImport (const Self &); //purposely not implemented
125  void operator=(const Self &); //purposely not implemented
126 
130  std::string m_FileName;
131  std::string m_fileNameModified;
132  std::string m_HeaderFileName;
133 
135 };
136 }
137 
138 #endif
GoFigureFileInfoHelperMultiIndexContainer m_OutputFileList
std::vector< int > IntVectorType
std::vector< std::string > StringVectorType
SmartPointer< const Self > ConstPointer
std::pair< IntVectorType, IntVectorType > PairIntVectorType
LightProcessObject Superclass
boost::multi_index::multi_index_container< GoFigureFileInfoHelper, boost::multi_index::indexed_by< boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_PCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_RCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_CCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_XTileCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_YTileCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_ZTileCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_ZCoord >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_Channel >, >, boost::multi_index::ordered_non_unique< boost::multi_index::tag< m_TCoord >, > >> GoFigureFileInfoHelperMultiIndexContainer
PairIntVectorType m_StartAndLengthNumGroup
SmartPointer< Self > Pointer