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GoDBMeshRow.h
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1 /*=========================================================================
2  Authors: The GoFigure Dev. Team.
3  at Megason Lab, Systems biology, Harvard Medical school, 2009-11
4 
5  Copyright (c) 2009-11, President and Fellows of Harvard College.
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33 =========================================================================*/
34 #ifndef __GoDBMeshRow_h
35 #define __GoDBMeshRow_h
36 
37 #include <string>
38 #include "boost/unordered_map.hpp"
39 
40 #include <iostream>
41 #include <sstream>
42 #include "GoDBTraceRow.h"
43 #include "GoDBCoordinateRow.h"
44 #include "ConvertToStringHelper.h"
45 #include "vtkMySQLDatabase.h"
46 #include "vtkPolyData.h"
47 #include "GoFigureMeshAttributes.h"
48 
55 class QGOIO_EXPORT GoDBMeshRow:public GoDBTraceRow
56 {
57 public:
58  GoDBMeshRow();
59 
70  explicit GoDBMeshRow(vtkMySQLDatabase *DatabaseConnector,
71  vtkPolyData *TraceVisu, GoDBCoordinateRow Min, GoDBCoordinateRow Max,
72  unsigned int ImgSessionID, GoFigureMeshAttributes *iMeshAttributes = 0);
73 
74  GoDBMeshRow(const GoDBMeshRow & iRow);
75 
80  GoDBMeshRow(unsigned int ImagingSessionID);
81 
82  //constructor GoDBTraceRow
83  GoDBMeshRow(unsigned int iExistingID,vtkMySQLDatabase *iDatabaseConnector);
84 
85  ~GoDBMeshRow();
86 
87  //int DoesThisBoundingBoxMeshExist(vtkMySQLDatabase* DatabaseConnector);
88 
94  void SetCellType(vtkMySQLDatabase *DatabaseConnector,
95  std::string CellTypeName);
96 
102  void SetSubCellType(vtkMySQLDatabase *DatabaseConnector,
103  std::string SubCellTypeName);
104 
105  //mother class method
106  virtual int SaveInDB(vtkMySQLDatabase *DatabaseConnector);
107 
108  //void ReInitializeMapAfterCast();
109 
110 
117  void SaveInDBTotalIntensityPerChannel(vtkMySQLDatabase *DatabaseConnector,
118  boost::unordered_map< std::string, int > iNameChannelWithValues);
119 
124  void SafeDownCast(GoDBTraceRow & iRow);
125 
129  void SetTheDataFromTheVisu(vtkMySQLDatabase *DatabaseConnector,
130  vtkPolyData *TraceVisu, GoDBCoordinateRow iCoordMin,
131  GoDBCoordinateRow iCoordMax,
132  GoFigureMeshAttributes *iMeshAttributes);
133 
140  static int GetCellTypeID(vtkMySQLDatabase *iDatabaseConnector,
141  std::string iCellTypeName);
142 
149  static int GetSubCellTypeID(vtkMySQLDatabase *iDatabaseConnector,
150  std::string iSubCellTypeName);
151 
152 protected:
153  //mother class method
154  virtual void InitializeMap();
155 
156  boost::unordered_map< std::string, int > m_NameChannelWithValues;
157 };
158 
159 #endif
abstract class to be inherited by Contour,Mesh,Track and GoDBLineageRow
Definition: GoDBTraceRow.h:50
boost::unordered_map< std::string, int > m_NameChannelWithValues
Definition: GoDBMeshRow.h:156
manages a map with keys matching fields of the gofiguredatabase Coordinate table and values of the ma...
virtual int SaveInDB(vtkMySQLDatabase *DatabaseConnector)=0
save the row in the database if the TraceID is set to &quot;0&quot;, update the existing traceRow if the TraceI...
this class manages the map with the keys matching the fields of the Mesh gofiguredatabase table and v...
Definition: GoDBMeshRow.h:55
virtual void InitializeMap()
virtual pure. initialize all the values of the map