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TrackStructure.h
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1 /*=========================================================================
2  Authors: The GoFigure Dev. Team.
3  at Megason Lab, Systems biology, Harvard Medical school, 2009-11
4 
5  Copyright (c) 2009-11, President and Fellows of Harvard College.
6  All rights reserved.
7 
8  Redistribution and use in source and binary forms, with or without
9  modification, are permitted provided that the following conditions are met:
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12  this list of conditions and the following disclaimer.
13  Redistributions in binary form must reproduce the above copyright notice,
14  this list of conditions and the following disclaimer in the documentation
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17  nor the names of its contributors may be used to endorse or promote
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32 
33 =========================================================================*/
34 
35 #ifndef __TrackStructure_h
36 #define __TrackStructure_h
37 
38 #include "TraceStructure.h"
39 #include "QGoIOConfigure.h"
40 
41 #include "TreeNodeStructure.h"
42 
44 
45 #include "vtkActor.h"
46 #include <map>
47 
48 #ifndef DOXYGEN_SHOULD_SKIP_THIS
49 #include "StructureHelper.h"
50 #endif
51 
52 class vtkIntArray;
53 
65 class QGOIO_EXPORT TrackStructure : public TraceStructure
66 {
67 public:
68 
70 
71  // contains pointers + actor
73 
77  typedef std::map< unsigned int, double* > PointsMapType;
78  typedef PointsMapType::iterator PointsMapIterator;
79  typedef PointsMapType::const_iterator PointsMapConstIterator;
80 
82 
85 
87  TrackStructure(const TrackStructure & iE);
88 
90  ~TrackStructure();
91 
100  bool InsertElement(const unsigned int& iTime, double* iPoint);
101 
108  bool DeleteElement(const unsigned int& iTime);
109 
110  void ReleaseData() const;
111 
113  friend std::ostream & operator<<
114  (std::ostream & os, const TrackStructure & c)
115  {
116  os << "TraceID " << c.TraceID << std::endl;
117  os << "ActorXY " << c.ActorXY << std::endl;
118  os << "ActorXZ " << c.ActorXZ << std::endl;
119  os << "ActorYZ " << c.ActorYZ << std::endl;
120  os << "ActorXYZ " << c.ActorXYZ << std::endl;
121  os << "Nodes " << c.Nodes << std::endl;
122  os << "Average Volume " << c.m_AverageVolume << std::endl;
123  os << "Map " << std::endl;
124 
125  std::map< unsigned int, double*>::const_iterator end = c.PointsMap.end();
126  std::map< unsigned int, double*>::const_iterator it = c.PointsMap.begin();
127 
128  while( it != end )
129  {
130  os << "Time: " << it->first << std::endl;
131  os << " Coordinate X: " << (it->second)[0] << std::endl;
132  os << " Coordinate Y: " << (it->second)[1] << std::endl;
133  os << " Coordinate Z: " << (it->second)[2] << std::endl;
134  ++it;
135  }
136 
137  os << "Highlighted " << c.Highlighted << std::endl;
138  os << "Visible " << c.Visible << std::endl;
139  os << "RGBA [" << c.rgba[0] << ", " << c.rgba[1] << ", " << c.rgba[2]
140  << ", " << c.rgba[3] << "]" << std::endl;
141 
142  return os;
143  }
144 
145  void UpdateLineWidth( const double& iWidth ) const;
146 
147  void UpdateTracksRepresentation( const double& iRadius,
148  const double& iRadius2 ) const;
149 
150  GoFigureTrackAttributes ComputeAttributes() const;
151 
152  void ModifyDivisionVisibility( const bool& iVisibility );
153  void ModifyDivisionHighlight( vtkProperty* iProperty,
154  const bool& iHighlight );
155 
156  void ModifyDivisionColorData( const double* iColor );
157  // for the highlight
158  void ModifyDivisionColorActor( const double* iColor );
159 
160  void AddDivisionArray( vtkIntArray* iArray );
161 
162  void CreateDivisionNode( vtkPolyData* iNode);
163 
164  const bool IsRoot() const;
165  const bool IsLeaf() const;
166 
167  // Add volume to a track
168  // note that added volume can be < 0
169  void AddVolume(const double& iVolume);
170 
171  // to be moved
173 };
174 
175 #endif
virtual void ReleaseData() const
TrackStructure Self
PointsMapType::const_iterator PointsMapConstIterator
double m_AverageVolume
TreeNodeStructure< Self > TreeNode
PointsMapType PointsMap
Structure which represent a track, and used for interaction between Visualization and TableWidget...
Structure which represent a tree node.
PointsMapType::iterator PointsMapIterator
std::map< unsigned int, double * > PointsMapType
Structure which represent a trace (contour, mesh, track, lineage), and used for interaction between V...